Structural Bioinformatics

  • Bio.PDB: the strutural bioinformatics module of Bioypython. Bio.PDB is a standard way to extract data from a PDB file that describes macromolecular structures and represent the data as an easy-to-use Python object. Bio.PDB is widely used in both industry and academia. An article describing Bio.PDB appeared in Bioinformatics, 2003.

Deep probabilistic programming

My group contributes to the deep probabilistic programming languages Pyro and NumPyro. The work below is by postdoc Ola Rønning.

Thomas Hamelryck

Department of biology
Section for Computational and RNA Biology (SCARB)
Ole Maaløes Vej 5
DK-2200 Copenhagen N


Department of computer science
Programming languages and theory of computation section (PLTC)
Universitetsparken 5, HCØ, building B
DK-2100 Copenhagen Ø

University of Copenhagen

Plain Academic